PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G255600.1
Common NameB456_011G255600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 295aa    MW: 33374.7 Da    PI: 9.6164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G255600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.7e-051872251154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         rR +++ +++  L++l+ +      +K + a++Le+A  YIk L
  Gorai.011G255600.1 187 RRSQKLSDKITALQKLVSPY-----GKTDIASVLEEASLYIKLL 225
                         7999**************99.....9****************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.309176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-7187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-6187242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKKNPNQLLI MRNALLSSLP LPSQFYNIGN NEAQMSYLDV LMRMETIGRN VEVDDAFSSE  60
SKTFNNGDQL GYGAFAAPYQ SHFNSDLRDH QFGSVNFGTY FQPSMSLNNK LAIPHFESDI  120
QNLQNGRKRP SIEFHQEQAP LNPTIALNEW NKNKRKKVSS FQQQQPAQQN IETVPGISDS  180
RLNMPVRRSQ KLSDKITALQ KLVSPYGKTD IASVLEEASL YIKLLHQHIQ NLFQMLRRSY  240
NSLGAIHPPQ ETEKKKQDLR GRGLCLVPIS FAQKVTEEEK TIDTNSISGT NNHP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453819.10.0PREDICTED: transcription factor bHLH123-like
TrEMBLA0A0D2UXZ10.0A0A0D2UXZ1_G
STRINGPOPTR_0008s05200.19e-44(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17246610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-20bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]